Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015949460.1_cds_XP_016490355.1_80784
CDS Infomation

[gene=LOC107810129] [db_xref=GeneID:107810129] [protein=E3 ubiquitin-protein ligase PRT1] [protein_id=XP_016490355.1] [location=complement(join(29142..29540,30402..30514,30851..31045,31169..31495,33371..33550,33646..33674,33785..33840))] [gbkey=CDS]
Sequence

ATGGAAAATGGCCAAACTGAAGAAATCCCAGATGAATTTCAATGCTGTGTTTGCCTGGAA
CTTTTGTATAAACCAGTTGTGTTAGGGTGTGGCCACATTGCTTGTTTTTGGTGTATATTT
AAGTCCATGAATACTTTGATGGAGTCAAACTGTCCCATTTGCCGGCACCCATATCATCAT
TTCCCTAATGTGTGTAGATTGATGCACTTTTTGCTTGTAAAGTTGTACCCTATAGACAGT
GCAAGAAGGGAAAAACAAGTGGCAGAGGAGGAGAAGAATGTAGGATATTTTTCACCTCAG
TTTGATGATTATTTATCAGAATCTTGTGGCAAGACCGATCTTGTTCTAGACACTGCTTCA
CCTCATTCCATCCCTTCAGAGAAATGTGGATCAGCAGGGGAAGAAGAGCATTCCTCAGTA
GTTTTTCCAGCAGTATCAAGTTCTGAAACCAAAGAGGATGCAATGTCAAAGAATCTTAAC
TTTGCAGATGAGCATACAAGTGCAAGCAGTAAGCAAGTGCTTATCGCAGATTTGCTTTGT
GGGATCTGCAAACTGTTGTTGTACCGACCTGTAGTTCTTAACTGTGGCCATGTTTATTGT
GAAAATTGCGTGATCAATCCTAGCGACAAGCTATGTAGATGTCCAGGTTGCCAATTGGAG
CATCCAAATGGATACCCCAATGTTTGCTTGGTTCTTGAGCACTTCTTGGAAGAGCAATTT
CCCAAGTTGTATGCAGAAAGGAAAAGCGCATCAGTGGAAAGATCTGATCGTCAAAATCCA
GCAACACGAGATCAGGATGAAGCTGCTGGTTGCAAATCACTACCTAAATTTGATCTTTCA
ACATGGTTAACGGGTGGGGGACCACAGGTTCATTTTGGAGTTGGTTGTGATTATTGTGGG
ATGTATCCTATTGTTGGGGAACGATACAAATGCAAAGACTGTAAGGAGAAAATAGGGTTC
GACCTTTGTGAGGGGTGCTATAAAAGCTCCTCGAAGCTCCCTGGCAGGTTTAATCAGCAA
CACACACCAGAACACCAATTTGATCTAATACAGCCACTTCAAGTGAGAAATGTGGTCCTG
AGGCTTCAACCTGAACGACTTGAAGAGGACGGCTCCATTGGCCTGCTTGAATATATCGAG
GAGGACAGTTCTGTTGAGGTTGAGCCACAGCACCCGGAAGAAGATTCCTCAGAGACCAAC
TCTCCGCGAAACGACTTAAGAGATGGTCAAGCAGGGAACATATCCTCAAATGACACTAGA
GAAGATCAAGGAGGGAGAGAATCTGCAAACAGAGATTAG

Peptide Sequence

PEP ID

XP_016490355.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase PRT1 [Nicotiana tabacum]
Sequence

MENGQTEEIPDEFQCCVCLELLYKPVVLGCGHIACFWCIFKSMNTLMESNCPICRHPYHH
FPNVCRLMHFLLVKLYPIDSARREKQVAEEEKNVGYFSPQFDDYLSESCGKTDLVLDTAS
PHSIPSEKCGSAGEEEHSSVVFPAVSSSETKEDAMSKNLNFADEHTSASSKQVLIADLLC
GICKLLLYRPVVLNCGHVYCENCVINPSDKLCRCPGCQLEHPNGYPNVCLVLEHFLEEQF
PKLYAERKSASVERSDRQNPATRDQDEAAGCKSLPKFDLSTWLTGGGPQVHFGVGCDYCG
MYPIVGERYKCKDCKEKIGFDLCEGCYKSSSKLPGRFNQQHTPEHQFDLIQPLQVRNVVL
RLQPERLEEDGSIGLLEYIEEDSSVEVEPQHPEEDSSETNSPRNDLRDGQAGNISSNDTR
EDQGGRESANRD

Transcript Sequence

Gene sequence data has not been registered.